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    Molecular Mechanisms Underlying the Effect of Paeoniae Radix Rubra on Sepsis-Induced Coagulopathy: A Network Pharmacology and Molecular Docking Approach

    Source: Journal of Engineering and Science in Medical Diagnostics and Therapy:;2022:;volume( 006 ):;issue: 001::page 11005-1
    Author:
    Gao, Shan
    ,
    Wang, Dongsheng
    DOI: 10.1115/1.4056104
    Publisher: The American Society of Mechanical Engineers (ASME)
    Abstract: To investigate the effective components and underlying mechanism of Paeoniae radix rubra (PRR) in treating sepsis-induced coagulopathy (SIC) on the basis of network pharmacology and molecular docking approaches. At present, no therapeutic agent has been approved for the treatment of SIC. Identifying drugs for SIC from Chinese medicine is an encouraging research direction. The predicted targets and effective components of PRR were identified by analysis of the Traditional Chinese Medicine Systems Pharmacology (TCMSP) database. Bio-informatics databases were employed to identify the disease targets of SIC. These key targets were then uploaded to the STRING database to generate protein–protein interaction networks. The ORG package in rv4.1.2 software was applied for functional and pathway enrichment analyses of the key targets. Finally, discovery studio software was used to perform docking analyses of key targets and effective components. Nine chemically active components and 84 common targets associated with drugs and SIC were identified. Protein–protein interaction (PPI) network analysis identified several key targets. Further analysis identified enrichment in several signaling pathways; these changes could exert influence on a number of biological processes, including responses to xenobiotic stimuli, oxidative stress, molecules of bacterial origin, thus playing an anti-SIC pharmacological role. According to molecular docking results, these key targets had strong binding affinity to the active components. PRR can contribute to SIC by medicating core target genes (e.g., CASP3, PTGS2, TP53, AKT1, MMP9, TNF, JUN, IL6, and CXCL8), and regulating multiple key pathways (e.g., the lipid and atherosclerosis pathway).
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      Molecular Mechanisms Underlying the Effect of Paeoniae Radix Rubra on Sepsis-Induced Coagulopathy: A Network Pharmacology and Molecular Docking Approach

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    contributor authorGao, Shan
    contributor authorWang, Dongsheng
    date accessioned2023-11-29T19:07:02Z
    date available2023-11-29T19:07:02Z
    date copyright11/23/2022 12:00:00 AM
    date issued11/23/2022 12:00:00 AM
    date issued2022-11-23
    identifier issn2572-7958
    identifier otherjesmdt_006_01_011005.pdf
    identifier urihttp://yetl.yabesh.ir/yetl1/handle/yetl/4294590
    description abstractTo investigate the effective components and underlying mechanism of Paeoniae radix rubra (PRR) in treating sepsis-induced coagulopathy (SIC) on the basis of network pharmacology and molecular docking approaches. At present, no therapeutic agent has been approved for the treatment of SIC. Identifying drugs for SIC from Chinese medicine is an encouraging research direction. The predicted targets and effective components of PRR were identified by analysis of the Traditional Chinese Medicine Systems Pharmacology (TCMSP) database. Bio-informatics databases were employed to identify the disease targets of SIC. These key targets were then uploaded to the STRING database to generate protein–protein interaction networks. The ORG package in rv4.1.2 software was applied for functional and pathway enrichment analyses of the key targets. Finally, discovery studio software was used to perform docking analyses of key targets and effective components. Nine chemically active components and 84 common targets associated with drugs and SIC were identified. Protein–protein interaction (PPI) network analysis identified several key targets. Further analysis identified enrichment in several signaling pathways; these changes could exert influence on a number of biological processes, including responses to xenobiotic stimuli, oxidative stress, molecules of bacterial origin, thus playing an anti-SIC pharmacological role. According to molecular docking results, these key targets had strong binding affinity to the active components. PRR can contribute to SIC by medicating core target genes (e.g., CASP3, PTGS2, TP53, AKT1, MMP9, TNF, JUN, IL6, and CXCL8), and regulating multiple key pathways (e.g., the lipid and atherosclerosis pathway).
    publisherThe American Society of Mechanical Engineers (ASME)
    titleMolecular Mechanisms Underlying the Effect of Paeoniae Radix Rubra on Sepsis-Induced Coagulopathy: A Network Pharmacology and Molecular Docking Approach
    typeJournal Paper
    journal volume6
    journal issue1
    journal titleJournal of Engineering and Science in Medical Diagnostics and Therapy
    identifier doi10.1115/1.4056104
    journal fristpage11005-1
    journal lastpage11005-11
    page11
    treeJournal of Engineering and Science in Medical Diagnostics and Therapy:;2022:;volume( 006 ):;issue: 001
    contenttypeFulltext
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    DSpace software copyright © 2002-2015  DuraSpace
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