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    Predicting Protein Folding Pathways With Quadratic Constraints on Rates of Entropy Change: A Nonlinear Optimization-Based Control Approach 

    Source: Journal of Dynamic Systems, Measurement, and Control:;2025:;volume( 147 ):;issue: 005:;page 51011-1
    Author(s): Mohammadi, Alireza; Spong, Mark W.
    Publisher: The American Society of Mechanical Engineers (ASME)
    Abstract: This paper addresses the problem of algorithmic prediction of protein folding pathways, namely, the transient three-dimensional conformations of protein molecules during folding, under constrained rates of entropy change. ...
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    Stability of Two Immiscible Fluid Systems: A Review of Canonical Plane Parallel Flows 

    Source: Journal of Fluids Engineering:;2016:;volume( 138 ):;issue: 010:;page 100801
    Author(s): Mohammadi, Alireza; Smits, Alexander J.
    Publisher: The American Society of Mechanical Engineers (ASME)
    Abstract: A brief review is given on the stability of twofluid systems. Our interest is primarily driven by drag reduction using superhydrophobic surfaces (SHS) or liquidinfused surfaces (LIS) where the longevity and performance ...
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    Surgical Robotic Manipulator Based on Local Magnetic Actuation1 

    Source: Journal of Medical Devices:;2015:;volume( 009 ):;issue: 003:;page 30936
    Author(s): Di Natali, Christian; Mohammadi, Alireza; Oetomo, Denny; Valdastri, Pietro
    Publisher: The American Society of Mechanical Engineers (ASME)
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    Robust Kalman-Type Filter for Non-Gaussian Noise: Performance Analysis With Unknown Noise Covariances 

    Source: Journal of Dynamic Systems, Measurement, and Control:;2019:;volume( 141 ):;issue: 009:;page 91011
    Author(s): Fakoorian, Seyed; Mohammadi, Alireza; Azimi, Vahid; Simon, Dan
    Publisher: American Society of Mechanical Engineers (ASME)
    Abstract: The Kalman filter (KF) is optimal with respect to minimum mean square error (MMSE) if the process noise and measurement noise are Gaussian. However, the KF is suboptimal in the presence of non-Gaussian noise. The maximum ...
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    Electromagnetic Actuator Across Abdominal Wall for Minimally Invasive Robotic Surgery1 

    Source: Journal of Medical Devices:;2015:;volume( 009 ):;issue: 003:;page 30937
    Author(s): Mohammadi, Alireza; Di Natali, Christian; Samsonas, Danielius; Valdastri, Pietro; Tan, Ying; Oetomo, Denny
    Publisher: The American Society of Mechanical Engineers (ASME)
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