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Modeling Flexibility in Myosin V Using a Multiscale Articulated Multi Rigid Body Approach
Publisher: The American Society of Mechanical Engineers (ASME)
Abstract: This paper presents a multiscale dynamic model for the simulation and analysis of flexibility in myosin V. A 3D finite segment model, a multirigid body model connected with torsional springs, is developed to mechanically ...
Modification of Nóse–Hoover Thermostat to Improve Temperature Response in Molecular Simulations
Publisher: The American Society of Mechanical Engineers (ASME)
Abstract: This work investigates the modification of the Nóse–Hoover thermostat, a well-known tool for controlling system temperature in nanoscale dynamical simulations. Nóse–Hoover response is characterized by a mean temperature ...
A Multiscale Formulation for Reducing Computation Time in Atomistic Simulations
Publisher: The American Society of Mechanical Engineers (ASME)
Abstract: Molecular dynamics simulations require significant computational resources to generate modest time evolutions. Large active forces lead to large accelerations, requiring subfemtosecond integration time steps to capture the ...
An Adaptive Multiscaling Approach for Reducing Computation Time in Simulations of Articulated Biopolymers
Publisher: The American Society of Mechanical Engineers (ASME)
Abstract: Microscale dynamic simulations can require significant computational resources to generate desired time evolutions. Microscale phenomena are often driven by even smaller scale dynamics, requiring multiscale system definitions ...
An Adaptive Multiscaling Approach for Reducing Computation Time in Simulations of Articulated Biopolymers
Publisher: American Society of Mechanical Engineers (ASME)
Abstract: Microscale dynamic simulations can require significant computational resources to generate desired time evolutions. Microscale phenomena are often driven by even smaller scale dynamics, requiring multiscale system definitions ...
Long Term Dynamic Simulation of a Stem Cell Nucleus
Publisher: The American Society of Mechanical Engineers (ASME)
Abstract: Biomolecular simulations are computationally expensive. Simulating time histories larger than seconds remain elusive even with the help of supercomputers. Biological phenomena are multiscale in nature. The dynamics range ...
Minimizing Computational Time for Long-Term Three-Dimensional Dynamic Simulation of Stem Cell Adipogenesis
Publisher: The American Society of Mechanical Engineers (ASME)
Abstract: This paper presents a high-speed approach to simulating the long-term mechanobiological development of stem cells during the adipogenesis process. A novel three-dimensional model of human bone marrow-derived mesenchymal ...
Minimizing Computational Time for Long-Term Three-Dimensional Dynamic Simulation of Stem Cell Adipogenesis
Publisher: The American Society of Mechanical Engineers (ASME)
Abstract: This paper presents a high-speed approach to simulating the long-term mechanobiological development of stem cells during the adipogenesis process. A novel three-dimensional model of human bone marrow-derived mesenchymal ...
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